Tentative Schedule and Notes

Date	Material Covered	Notes, Papers	Comments
March 29	Introduction	Intro
31	Molceular Biology and Biotechnologies	Bio and Biotech intro	Start Group Forming!
April 2	Microarrays: Normalization and Diff Expression	Stats
April 5	Microarrays: Normalization and Diff Expression
7	* R examples *		Project Groups Formed
9	Data Mining: Clustering	Clustering
12	*Student Presentation & Discussion*	see presentation schedule
14	Clustering
16	Data Mining: Classification	Classification	Project Proposals Due
19	Classification, contd. and R examples	Check out the Google group
21	Promoter Region Analysis	Motif Finding
23	PRA, contd.
26	*Student Presentation & Discussion*	see presentation schedule
28	Integrative Data Analysis: Gene Expression + Promoter Region	Expression+Promoter
30	Integrative Data Analysis: other	Genomic Data Integration
May 3	Modeling and Analysis of Biological Networks I	Continuous models
5	Modeling and Analysis of Biological Networks II	Combinatorial models
7	*Student Presentation & Discussion*	see presentation schedule
10	*Student Presentation & Discussion*		Project Progress Reports Due
12	Modeling and Analysis of Biological Networks III
14	Realistic Models of Regulation	Endo16: paper 1, paper 2
17	No class: Vladimir is out of town
19	Realistic Models, contd.	Drosophila: paper 3
21	*Student Presentation & Discussion*	see presentation schedule
24
26	Next Gen Computational Methods: Network Analysis	paper 1, paper 2
28	Next Gen Technologies	Next Gen Sequencing ChIP-seq (wiki), RNA-seq (wiki)
31	No Class: due to Memorial Day Holiday
June 2	Project Presentations
June 7	P r o j e c t	R e p o r t s	D u e