Schedule (tentative) and Notes 
(see also the reading list page for links to papers used in the lecture and additional reading)

Date Material Covered Notes Comments
January  6 Introduction, Mol. Bio. Background Intro
  
     8 Biotechnologies, CS for Biologists Biotech, CS for Bio. Start Group Forming!
13 Microarrays: Data Processing, Differential Expression Stats  
15 Microarrays: Clustering Clustering Project Groups Formed
20 Vladimir out of town  
22 ***Paper Presentation & Discussion*** see presentation schedule
27 Microarrays: Classification Classification Project Proposals Due
29 Promoter Region Analysis Motif Finding  
February   3 Data Integration I: Expression + Promoter region Data Int I  
5 Data Integration II: Expression + TF DNA+PPI Data Int II
10 ***Paper Presentation & Discussion*** see presentation schedule
12 ***Paper Presentation & Discussion*** see presentation schedule
17 Gene Regulation Modeling: Continuous Models Continuous Models

19 Gene Regulation Modeling: Combinatorial Models
 Combinatorial Models GN (survey chapter)
24 ***Paper Presentation & Discussion*** see presentation schedule Progress Reports Due
26 ***Paper Presentation & Discussion*** see presentation schedule
3 ***Paper Presentation & Discussion*** see presentation schedule
5 Combinatorial Models, contd.
March  10 ***Paper Presentation & Discussion*** see presentation schedule
12 Toward Realistic Models of Regulation Realistic Models Last class
17       P  r  o  j  e  c  t R  e  p  o  r  t  s      D  u  e!