Modeling and Inference of Transcriptional Gene Networks

ECS 289A, Spring 2004 (CRN: 60541)


Professor

    Vladimir Filkov
    Office: 3023 Kemper Hall
    Office Hours: TBA
    Email: filkov AT cs.ucdavis.edu
    Phone: (530) 752-8393

Time and Place

       TR, 9:00 am - 10:20 am
       Olson Hall, Room 207

Course Description:

This is a seminar course on computational modeling and methods for inference of gene networks, using gene expression and other large-scale genetic data. The following discrete and continuous models will be discussed: graph models, Boolean networks, Bayesian networks, Linear models, and differential equations. The emphasis will be on data-driven, network inference methods, including combinatorial optimization, Bayesian reasoning, systems of linear equations, graph algorithms and others.

Syllabus

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