Schedule and Notes
(see also the reading list page for links to
papers used in the lecture and additional reading)
| Date | Material Covered | Notes | Comments |
| April 5 | Introduction and Mol. Bio. Background | Intro | |
| 7 | Biotechnologies and CS for Biologists | Biotech | CS for Bio. (not presented in class) |
| 12 | Microarrays: Data Processing, Differential Expression | Stats | |
| 14 | Microarrays: Classification | Classification | |
| 19 | ***Presentations | Project Proposals Due | |
| 21 | ***Presentations | ||
| 26 | Microarrays: Clustering, two way clustering, biclustering | Clustering | Clustering (old notes) |
| 28 | Promoter Region Analysis | Motif Finding | Motif finding (old notes) |
| May 3 | Data Integration I: Expression + Promoter region | Data Int I | |
| 5 | Data Integration II: Expression + TF DNA | Data Int II | Short ORACLE presentation (NEW!) |
| 10 | ***Presentations | ||
| 12 | ***Presentations | ||
| 17 | **** Vladimir out of town **** | ||
| 19 | Biological Networks | Gene Nets I | GN (survey notes) |
| 24 | Gene Networks | Gene Nets II | Project Progress Reports Due |
| 26 | ***Presentations | ||
| 31 | More networks... | ||
| June 2 | ***Presentations | ||
| 7 | Gene Regulation Modeling | Realistic Models | |
| 14 | P r o j e c t | R e p o r t s | D u e! |