Tentative Schedule and Notes

Date	Material Covered	Notes, Papers	Comments
Jan 4	Introduction, Molecular Biology and Biotechnologies	Intro	Start Group Forming!
6	Molecular Biology and Biotechnologies, contd.	Notes
Jan 11	From Data to Networks	GRN, paper 1 GRN, paper 2	Please read the papers before class
13	From Data to Network, contd.	PPI paper Metabolic Pathways paper	Project Groups Formed
18	Vladimir is out of town, no class.
20	Representing Networks	Paper 1 Paper 2	Project Proposals Due
25	Tools for Networks	Paper 1 Paper 2 Tutorial	Link to other tools
27	Student Presentations
Feb 1	Characterizing Networks I: Bottom-up Approaches	Paper 1 Paper 2 Paper 3
3	Bottom-up, contd.
8	Network Modeling	Combinatorial Approaches Continuous Approaches
10	Guest Lecture: Prof D'Souza her slides are here	Related paper	Statistical Mechanics of Networks
15	Student Presentations
17	Network Inference from Large Scale Data	Paper
22	Comparing Networks	Paper 1 Paper 2 Paper 3 Paper 4	Progress Reports Due
24
March 1	Student Presentations
3	Network Evolution	Paper 1 Paper 2 Paper 3 Paper 4
8
10	Last class - Project presentations
March 19	P r o j e c t	R e p o r t s	D u e