*****Illustrative Meetings, past, present and future:
****Courses, Tutorials and Educational Material:
****Research Publications illustrating Networks Biology (these need not be publications from UCD):
Here will be citations that link to either the actual papers, or to the pubmed citation for that paper.
The following were suggested by Alex Mogilner:
Almaas E, Oltvai ZN, Barabasi AL.
The Activity Reaction Core and Plasticity of Metabolic Networks.
PLoS Comput Biol. 2005 Dec 16;1(7):e68
PMID: 16362071
Almaas E, Kovacs B, Vicsek T, Oltvai ZN, Barabasi AL.
Global organization of metabolic fluxes in the bacterium Escherichia coli.
Nature. 2004 Feb 26;427(6977):839-43.
PMID: 14985762
Science. 2005 Apr 22;308(5721):523-9.
Causal protein-signaling networks derived from multiparameter
single-cell data.
Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP.
TOWARD PREDICTIVE MODELS OF MAMMALIAN CELLS
Avi Ma'ayan, Robert D. Blitzer, Ravi Iyengar
Annual Review of Biophysics and Biomolecular Structure, Vol. 34: 319-349
Stelling J, Gilles ED, Doyle FJ
Robustness properties of circadian clock architectures.
Proc Natl Acad Sci U S A. 2004 Sep 7;101(36):13210-5.
PMID: 15340155
von Dassow G, Meir E, Munro EM, Odell GM.
The segment polarity network is a robust developmental module.
Nature. 2000 Jul 13;406(6792):188-92.
PMID: 10910359
Alon U, Surette MG, Barkai N, Leibler S.
Robustness in bacterial chemotaxis.
Nature. 1999 Jan 14;397(6715):168-71.
SIAM J. APPL. MATH. 2005 Vol. 65, No. 5, pp. 1526
MULTIPLE EQUILIBRIA IN COMPLEX CHEMICAL REACTION
NETWORKS: I. THE INJECTIVITY PROPERTY
GHEORGHE CRACIUN AND MARTIN FEINBERG
Shmulevich I, Kauffman SA, Aldana M.
Eukaryotic cells are dynamically ordered or critical but not chaotic.
Proc Natl Acad Sci U S A. 2005 Sep 20;102(38):13439-44.
PMID: 16155121
Janes KA, Albeck JG, Gaudet S, Sorger PK, Lauffenburger DA, Yaffe MB.
A systems model of signaling identifies a molecular basis set for
cytokine-induced apoptosis.
Science. 2005 Dec 9;310(5754):1646-53.
PMID: 16339439
Prill RJ, Iglesias PA, Levchenko A.
Dynamic Properties of Network Motifs Contribute to Biological Network
Organization.
PLoS Biol. 2005 Oct 4;3(11):e343
PMID: 16187794
Reconstruction of a Functional Human Gene Network, with an Application for Prioritizing Positional Candidate Genes
Lude Franke, Harm van Bakel, Like Fokkens, Edwin D. de Jong, Michael Egmont-Petersen, and Cisca Wijmenga
American J. of Human Genetics, Online publication, April 25, 2006
Elucidating the murine brain transcriptional network in a segregating mouse
population to identify core functional modules for obesity and diabetes
Pek Yee Lum, Yanqing Chen, Jun Zhu, John Lamb, Shlomo Melmed, Susanna Wang, Tom A. Drake, Aldons J. Lusis, and Eric E. Schadt
Journal of Neurochemistry, 2006, 97 (Suppl. 1).
****Journals
****Powerpoints of Research talks:
****Illustrative jobs reflecting Networks Biology:
*****Links to webpages with many links to network biology: