Resources

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• SEE THIS FIRST! Resources for Systems/Network Biology


• Other Databases and Literature Search
• NCBI  Entrez (GenBank, PubMed, and many others)
• ExPASy
• NCBI Gene Expression Omnibus (GEO)
• Stanford Microarray Database (SMD)
• MIPS
• TRANSFAC
• Pathway Databases (KEGG, etc.)


• NCBI Tutorials on:
• Molecular Genetics
• Bioinformatics
• NCBI BLAST
• Microarray Technology


• General Tools and Software
• NCBI
• bioPerl, bioPython
• R
• Bioconductor
• GCG


• Texts Related to This Class
• Analysis of Complex Networks, Dehmer, Emmert-Streib; Editors.
• Evolution of networks: from biological nets to the Internet and WWW, Dorogovtsev, Mendes
• Analysis of Biological Networks, Junker, Schreiber


• Related Classes at UC Davis and Elsewhere
• Two related courses I've taught in past years (the old lectures slides are from there):
  • Modeling Gene Regulation (Winter '03)
  • Gene Network Inference (Spring '04)


• Advice on Academic Presentations and Writing (compiled by Prof. Zhendong Su):
• "So long, and thanks for the Ph.D.!"
• Ian Parberry's Referee's Guide
• The Task of the Referee by Alan Jay Smith, IEEE Computer 1990
• Some advice on giving a talk by Olivier Danvy.
• Oral Presentation Advice by Mark Hill.
• How to give a good research talk. Simon Peyton Jones, John Launchbury, John Hughes, SIGPLAN Notices 28(11), Nov 1993.
• How to have your abstract rejected by Mary-Claire van Leunen and Richard Lipton.
• Advice to Authors of Extended Abstracts by William Pugh.
• How to Have a Bad Career in Research/Academia by David A. Patterson.
• Some Collection of Advice.