Schedule (tentative) and Notes
(see also the reading list page for links to
papers used in the lecture and additional reading)
| Date | Material Covered | Notes | Comments |
| April 1 | Introduction, Mol. Bio. Background, Biotechnologies | Intro Biotech |
|
| 3 | Biotechnologies and CS for Biologists | CS for Bio. | Start Group Forming! |
| 8 | Microarrays: Data Processing, Differential Expression | Stats | |
| 10 | Microarrays: Classification | Classification | Project Groups Formed |
| 15 | ***Paper Presentation & Discussion*** | Project Proposals Due | |
| 17 | ***Paper Presentation & Discussion*** | ||
| 22 | Microarrays: Clustering, two way clustering, biclustering | Clustering | |
| 24 | **** Vladimir out of town **** (guest lecture?) | ||
| 29 | Promoter Region Analysis | Motif Finding | |
| May 1 | Data Integration I: Expression + Promoter region | Data Int I | |
| 6 | Data Integration II: Expression + TF DNA | Data Int II | |
| 8 | ***Paper Presentation & Discussion*** | ||
| 13 | ***Paper Presentation & Discussion*** | Progress Reports Due | |
| 15 | Gene Networks | Gene Nets |
Old Gene Nets I, Old Gene Nets II |
| 20 | Biological Networks |
contd. |
GN (survey chapter) |
| 22 | Properties of Complex Networks, guest lecture by Prof. Raissa D'Souza |
Prof. D'Souza's talk slides |
Complex Networks |
| 27 | ***Paper Presentation & Discussion*** | ||
| 29 | ***Paper Presentation & Discussion*** | ||
| 3 | Realistic Models of Regulation | Realistic Models | |
| June 5 | ***Project Presentations*** |
Last class | |
| 10 | P r o j e c t | R e p o r t s | D u e! |