The electronic documents below are provided for convenience. Note that some may be copyrighted, and/or belong to a corresponding publishing entity.

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• Dual Ecological Measures of Focus for Software Development
  Daryl Posnett, Raissa D'Souza, Prem Devanbu, Vladimir Filkov
  International Conference of Software Engineering, ICSE 2013 (accepted)
  
  
• Measuring the Effect of Social Communications on Individual Working Rhythms: A Case Study of Open Source Software
  Qi Xuan, Mohammad Gharehyazie, Premkumar Devanbu, Vladimir Filkov
  ASE/IEEE International Conference on Social Informatics, 2012, Washington DC, USA
  
  
• Mining Stack Exchange: Expertise is Evident From Initial Contributions
  Daryl Posnett, Eric Warburg, Premkumar Devanbu, Vladimir Filkov
  ASE/IEEE International Conference on Social Informatics, 2012, Washington DC, USA.
  
  
• MIC Check: A Correlation Tactic for ESE Data
  D. Posnett, P. Devanbu, V. Filkov.
  Proceedings of the 9th IEEE/ACM Working Conference on Mining Software Repositories (MSR), 2012
  
  
• POPE: Pipeline for Parentally-biased Expression .
  V. Missirian, Isabelle Henry, Luca Comai, V. Filkov.
  Proceedings of the 8th International Symposium on Bioinformatics Research and Applications (ISBRA), 2012
  
  
• Invited: Identifying mutations from TILLING experiments.
  V. Filkov.
  IEEE ICCABS 2012 (invited lecture)
  
  
• Ecological inference in empirical software engineering. Winner: Best Paper and Distinguished Paper Award
  D. Posnett, V. Filkov, P. Devanbu.
  Proceedings of the 26th IEEE/ACM International Conference on Automated Software Engineering (ASE), 2011
  
  
• Discovery of Rare Mutations in Populations: TILLING by Sequencing
  H. Tsai, T. Howell, R. Nitcher, V. Missirian, B. Watson, K. Ngo, M. Lieberman, J. Fass, C. Uauy, R. Tran, A. Khan, V. Filkov, T. Tai, J. Dubcovsky, L. Comai.
  Plant Physiology, 156(3), 1257-1268, 2011
  
  
• Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments
  V. Missirian, L. Comai, V. Filkov.
  BMC Bioinformatics, 12:287, 2011
  
  
• Validity of Network Analyses in Open Source Projects
  R. Nia, C. Bird, P. Devanbu, V. Filkov.
  Proceedings of the Seventh Working Conference on Mining Software Repositories, 2010
  
  
• Strong associations between microbe phenotypes and their network architecture
  S. Roy, V. Filkov
  Physical Review E 80, 040902(R), 2009 (rapid communication) 
  
  
• Fair and Balanced? Bias in bug-fix Datasets
  C. Bird, A. Bachmann, E. Aune, J. Duffy, A. Bernstein, V. Filkov, P. Devanbu
  Proceedings of SIGSOFT FSE 2009
  
  
• Modeling and verifying a broad array of network properties
  V. Filkov, Z. M. Saul, S. Roy, R. M. D'Souza, P. T. Devanbu
  EPL (Europhysics Letters) 2009 April; 86(2), 28003
  
  
• From Architecture to Function (and Back) in Bio-networks (Invited)
  V. FIlkov
  Proceedings of 1st International Conference on Bioinformatics and Computational Bilogy (BICoB) 2009
  
  
• Evolution of Apache Open Source Software
  H.-R. Wen, R.M. D'Souza, Z. M. Saul, V. Filkov
  chapter in Dynamics On and Of Complex Networks, Birkhauser, Springer. 2009
  
  
• Structure and Dynamics of Research Collaboration in Computer Science
  C. Bird, E. Barr, A. Nash, P. Devanbu, V. Filkov, and Z. Su.
  Proceedings of SIAM International Conference on Data Mining (SDM), 2009, 826-837.
  
  
• A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast
  V. Filkov, N. Shah
  Journal of Computational Biology 2008 May; 15(4): 393-405.
  
  
• Latent Social Structure in Open Source Projects
  C. Bird, D. Pattison, R. D'Souza, V. Filkov, P. Devanbu
  Proceedings of SIGSOFT FSE 2008, 24-35.
  
  
• Consensus Clustering Algorithms: Comparison and Refinement
  A. Goder, V. Filkov
  Proceedings of ALENEX 2008, 109-117.
  
  
• Exploring Biological Network Structure Using Exponential Random Graph Models
  Z. M. Saul; V. Filkov
  Bioinformatics 2007 Oct 1;23(19):2604-11. 
  
  
• Recommending Random Walks
  Z. M. Saul, V. Filkov, P. Devanbu, C. Bird
  Proceedings of ESEC/SIGSOFT FSE 2007, 15-24.
  
  
• Methods for Random Modularization of Biological Networks
  Z. M. Saul, V. Filkov
  Proceedings of BIBE 2006: 285-288.
  
  
• A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem
  Z. Ding, V. Filkov, D. Gusfield
  Journal of Computational Biology 2006 Mar;13(2):522-553
  (a shorter version appeared at RECOMB 2005). 
  
  
• Identifying Gene Regulatory Networks from Gene Expression Data
  V. Filkov
  chapter in Handbook of Computational Molecular Biology (S. Aluru editor), Chapman&Hall/CRC Press 2005.
  
  
• Microarray Data Integration and Top-Down Modeling of Gene Regulation
  V. Filkov (invited)
  Proceedings of 4th Int.Conf. on Informatics and IT, 2004, 423-432. (2004).
  
  
• Regulation Hierarchies from Expression Data
  V. Filkov, N. Shah
  Proceedings of RECOMB Satellite Workshop on Regulatory Genomics, 88-97, 2004.
  
  
• Heterogeneous Data Integration with the Consensus Clustering Formalism
  V. Filkov,  S. Skiena
  Proceedings of DILS'04, 110-123, 2004.
  
  
• Integrating Microarray Data by Consensus Clustering
  V. Filkov, S. Skiena
  International Journal on Artificial Intelligence Tools, 13(4): 863-880, 2004 
  
  
• GeneBox: Interactive Visualization of Microarray Data Sets
  N. Shah, V. Filkov, B. Hamann, K. Joy
  Proceedings of METMBS'03, 10-16, 2003.
  
  
• Computational Understanding of Cis-Regions
  V. Filkov, S. Istrail (invited)
  Genome Informatics 13:236-239, 2002.
  
  
• Analysis Techniques for Microarray Time-Series Data
  V. Filkov, S. Skiena, J. Zhu
  Journal of Computational Biology 9:317-330, 2002
  (a shorter version appeared at RECOMB 2001).
  
  
• Covering Points on a Circle with Circular Arcs
  V. Filkov
  Proceedings of CCCG 2000.
  
  
• Identifying Gene Regulatory Networks from Experimental Data
  T. Chen, V. Filkov, S. Skiena
  Proceedings of RECOMB 1999
  (extended version appeared in Parallel Computing, 27(1-2): 141-162, 2001).